B

Biomcp

BioMCP is an open - source biomedical AI toolkit that provides professional biomedical knowledge support for AI systems by connecting to authoritative data sources.
3 points
120

What is BioMCP?

BioMCP is an open - source tool that connects AI systems to authoritative biomedical databases such as PubMed, ClinicalTrials.gov, and MyVariant.info through the Model Context Protocol (MCP), helping users quickly obtain accurate biomedical information.

How to use BioMCP?

BioMCP can be operated through simple command - line operations. Users can easily search for literature, clinical trials, and genetic variation information.

Applicable Scenarios

BioMCP is suitable for researchers, doctors, and students who need to quickly retrieve biomedical information. For example, finding relevant research on specific gene mutations or searching for clinical trials related to diseases.

Main Features

PubMed and PubTator3 SupportQuery PubMed and PubTator3 through natural language to obtain biomedical literature and their detailed information.
ClinicalTrials.gov IntegrationSearch for and obtain comprehensive information about clinical trials, including trial locations, results, and references.
MyVariant.info SupportQuery and obtain comprehensive annotation information about genetic variations.

Advantages and Limitations

Advantages
Provide authoritative and real - time updated biomedical data
Support multiple natural language query methods
Easy to integrate into existing AI systems
Limitations
Require a certain network environment support
May take longer to respond to complex queries

How to Use

Install BioMCP
First, ensure that Python or the uv tool is installed in your environment.
Start the Server
Run the following command to start the BioMCP server.
Execute Queries
Use predefined commands to perform data queries.

Usage Examples

Case 1: Find Literature Related to Gene MutationsUsers want to know the research progress of specific gene mutations (such as BRAF) in melanoma.
Case 2: Search for Clinical TrialsUsers want to find specific information about Phase III clinical trials for lung cancer.

Frequently Asked Questions

How to install BioMCP?
Does BioMCP support multi - language queries?

Related Resources

BioMCP Official Website
Visit the official website for more detailed information.
GitHub Code Repository
View the source code and contribute to the project.
YouTube Tutorial Video
Watch the video to learn how to use BioMCP.
Installation
Copy the following command to your Client for configuration
{
     "mcpServers": {
       "biomcp": {
         "command": "uv",
         "args": ["run", "--with", "biomcp-python", "biomcp", "run"]
       }
     }
   }
Note: Your key is sensitive information, do not share it with anyone.
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