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Biorxiv

The bioRxiv MCP Server is a bridge connecting AI assistants with the bioRxiv preprint library, enabling the search for biological preprints and access to metadata through the MCP protocol.
Research and dataSearch tools#Paper Search#Metadata#Biological Research#MCP Service.Python
2.5 points
26

What is the bioRxiv MCP Server?

The bioRxiv MCP Server is a bridge connecting AI assistants with the bioRxiv biological preprint database. It allows users to quickly obtain the latest research papers in the field of biology through simple keyword searches or advanced searches.

How to use the bioRxiv MCP Server?

Simply start the server and enter your query to begin searching for and accessing research results in the field of biology.

Applicable Scenarios

This tool is very suitable for researchers, students, and anyone interested in the field of biology to find the latest scientific research progress and papers.

Main Features

Keyword SearchQuickly search for relevant biological preprints by entering keywords.
Advanced SearchSupport multi - parameter combination for more precise searches.
Get MetadataGet detailed metadata of a paper based on its DOI.
View Paper ListBrowse the list of downloaded papers.
Local StorageSave papers locally for faster access.
Research PromptsProvide specialized research analysis prompts.

Advantages and Limitations

Advantages
Quick access to the latest research in the field of biology.
Support multiple search methods to meet different needs.
Provide detailed paper metadata.
Local storage improves access efficiency.
Compatible with multiple AI assistant platforms.
Limitations
Requires a certain computer foundation to install and run.
Depends on network connection and cannot be used offline.
Subject to bioRxiv API limitations, some functions may not be available.

How to Use

Clone the Repository
First, you need to clone the code repository on GitHub.
Install Dependencies
Install the required Python dependency libraries.
Start the Server
Run the script to start the MCP server.

Usage Examples

Search for PapersUsers can search for the latest papers on genomics.
Get Paper DetailsUsers can get detailed information about a specific paper through its DOI.

Frequently Asked Questions

How to install the bioRxiv MCP Server?
Does it support all AI assistants?
How to stop the server?

Related Resources

GitHub Code Repository
The source code and documentation of this project.
bioRxiv Official Website
The main publishing platform for biological preprints.
Installation
Copy the following command to your Client for configuration
{
  "mcpServers": {
    "biorxiv": {
      "command": "python",
      "args": ["-m", "biorxiv-mcp-server"]
      }
  }
}

{
  "mcpServers": {
    "biorxiv": {
      "command": "C:\\Users\\YOUR_USERNAME\\AppData\\Local\\Programs\\Python\\Python311\\python.exe",
      "args": [
        "-m",
        "biorxiv-mcp-server"
      ]
    }
  }
}

{
  "mcpServers": {
    "biorxiv": {
      "command": "bash",
      "args": [
        "-c",
        "source /home/YOUR/PATH/mcp-server-bioRxiv/.venv/bin/activate && python /home/YOUR/PATH/mcp-server-bioRxiv/biorxiv_server.py"
      ],
      "env": {},
      "disabled": false,
      "autoApprove": []
    }
  }
}
Note: Your key is sensitive information, do not share it with anyone.
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