AIBase
EN
Explore
Pubmedmcp
P

Pubmedmcp

PubMed Literature Retrieval MCP Service
Research and dataSearch tools#Literature Retrieval#Biomedicine#MCP Service.Python
2.5 points
10.3K
Open Site

Overview

Installation

Content Details

Alternatives

What is PubMed MCP?

PubMed MCP is a tool that allows users to search for and obtain medical literature in the PubMed database by keywords. It supports the retrieval of more than 35 million biomedical literatures, covering MEDLINE, life - science journals, and online books.

How to use PubMed MCP?

Just add the server to your Claude desktop configuration file according to the configuration guide, and then perform search and obtain operations through the command line.

Applicable scenarios

Suitable for researchers, doctors, and students who need to quickly find medical research literature. Whether you are looking for research on specific diseases or learning about the latest treatment progress, PubMed MCP can meet your needs.

Main Features

Literature Search
Search for literature in PubMed by keywords or advanced filtering conditions.
Article Retrieval
Directly download the full text or abstract of specific literature according to PMID or PMCID.
Filtering and Sorting
Support filtering and sorting of search results by publication date, journal impact factor, etc.
Advantages
Powerful search algorithm covering a wide range of fields
Support for downloading articles in multiple languages and formats
Easy to integrate into existing workflows
Limitations
Need to install and correctly configure the uv environment
Full - text access to some pay - per - view journals may not be available

How to Use

Install Dependencies
Make sure the uv tool is installed and added to the system PATH.
Configure Claude Desktop
Add the PubMed MCP server configuration to claude_desktop_config.json.
Perform Search
Start PubMed MCP through the command line and enter keywords to search.

Usage Examples

Find literature related to diabetes
Demonstrate how to use PubMed MCP to search for the latest research on diabetes.
Download a specific article
Show how to download a specific article according to PMID.

Frequently Asked Questions

What types of literature does PubMed MCP support?
Why can't I download articles from some pay - per - view journals?
How to update the PubMed MCP server version?

Related Resources

PubMed MCP GitHub Repository
An open - source code repository provided on GitHub.
PubMed Official Documentation
The official user guide for the PubMed database.
Claude Desktop Configuration Tutorial
Detailed instructions on how to configure the Claude desktop environment.

Installation

Copy the following command to your Client for configuration
{
    "mcpServers": {
        "pubmedmcp": {
            "command": "uvx",
            "args": ["pubmedmcp@latest"],
            "env": {
                "UV_PRERELEASE": "allow",
                "UV_PYTHON": "3.12"
            }
        }
    }
}
Note: Your key is sensitive information, do not share it with anyone.

Alternatives

A
Airweave
Airweave is an open - source context retrieval layer for AI agents and RAG systems. It connects and synchronizes data from various applications, tools, and databases, and provides relevant, real - time, multi - source contextual information to AI agents through a unified search interface.
Python
7.1K
5 points
P
Paperbanana
Python
6.3K
5 points
F
Finlab Ai
FinLab AI is a quantitative financial analysis platform that helps users discover excess returns (alpha) in investment strategies through AI technology. It provides a rich dataset, backtesting framework, and strategy examples, supporting automated installation and integration into mainstream AI programming assistants.
5.8K
4 points
B
Better Icons
An MCP server and CLI tool that provides search and retrieval of over 200,000 icons, supports more than 150 icon libraries, and helps AI assistants and developers quickly obtain and use icons.
TypeScript
6.0K
4.5 points
A
Apify MCP Server
The Apify MCP Server is a tool based on the Model Context Protocol (MCP) that allows AI assistants to extract data from websites such as social media, search engines, and e-commerce through thousands of ready-to-use crawlers, scrapers, and automation tools (Apify Actors). It supports OAuth and Skyfire proxy payment and can be integrated into MCP clients such as Claude and VS Code through HTTPS endpoints or local stdio.
TypeScript
7.7K
5 points
P
Praisonai
PraisonAI is a production-ready multi-AI agent framework with self-reflection capabilities, designed to create AI agents to automate the solution of various problems from simple tasks to complex challenges. It simplifies the construction and management of multi-agent LLM systems by integrating PraisonAI agents, AG2, and CrewAI into a low-code solution, emphasizing simplicity, customization, and effective human-machine collaboration.
Python
10.4K
5 points
H
Haiku.rag
Haiku RAG is an intelligent retrieval - augmented generation system built on LanceDB, Pydantic AI, and Docling. It supports hybrid search, re - ranking, Q&A agents, multi - agent research processes, and provides local - first document processing and MCP server integration.
Python
9.3K
5 points
C
Claude Context
Claude Context is an MCP plugin that provides in - depth context of the entire codebase for AI programming assistants through semantic code search. It supports multiple embedding models and vector databases to achieve efficient code retrieval.
TypeScript
17.9K
5 points
N
Notion Api MCP
Certified
A Python-based MCP Server that provides advanced to-do list management and content organization functions through the Notion API, enabling seamless integration between AI models and Notion.
Python
21.5K
4.5 points
M
Markdownify MCP
Markdownify is a multi-functional file conversion service that supports converting multiple formats such as PDFs, images, audio, and web page content into Markdown format.
TypeScript
34.5K
5 points
D
Duckduckgo MCP Server
Certified
The DuckDuckGo Search MCP Server provides web search and content scraping services for LLMs such as Claude.
Python
72.4K
4.3 points
G
Gitlab MCP Server
Certified
The GitLab MCP server is a project based on the Model Context Protocol that provides a comprehensive toolset for interacting with GitLab accounts, including code review, merge request management, CI/CD configuration, and other functions.
TypeScript
24.7K
4.3 points
F
Figma Context MCP
Framelink Figma MCP Server is a server that provides access to Figma design data for AI programming tools (such as Cursor). By simplifying the Figma API response, it helps AI more accurately achieve one - click conversion from design to code.
TypeScript
64.6K
4.5 points
U
Unity
Certified
UnityMCP is a Unity editor plugin that implements the Model Context Protocol (MCP), providing seamless integration between Unity and AI assistants, including real - time state monitoring, remote command execution, and log functions.
C#
31.3K
5 points
G
Gmail MCP Server
A Gmail automatic authentication MCP server designed for Claude Desktop, supporting Gmail management through natural language interaction, including complete functions such as sending emails, label management, and batch operations.
TypeScript
22.1K
4.5 points
C
Context7
Context7 MCP is a service that provides real-time, version-specific documentation and code examples for AI programming assistants. It is directly integrated into prompts through the Model Context Protocol to solve the problem of LLMs using outdated information.
TypeScript
97.5K
4.7 points
AIBase
Zhiqi Future, Your AI Solution Think Tank
English简体中文繁體中文にほんご
© 2026AIBase