AIBase
EN
Explore
Chembl MCP Server
C

Chembl MCP Server

A ChEMBL database API access service based on the FastMCP framework, providing support for asynchronous calls and multiple transport methods.
Research and dataDeveloper tools#ChEMBL interface#Asynchronous service#Chemical database#API encapsulation.Python
2 points
6.1K
Open Site

Overview

Content Details

Alternatives

What is ChEMBL-MCP-Server?

ChEMBL-MCP-Server is an API service based on the FastMCP framework. It encapsulates the chemical and biological activity data of the ChEMBL database, providing a convenient query interface for researchers. Through this service, users can easily obtain key data such as drug molecules, biological targets, and activity tests.

How to use ChEMBL-MCP-Server?

You can access the ChEMBL database through simple API calls without complex configuration. The service supports two interaction methods: HTTP and standard input/output, which are suitable for integration requirements in different scenarios.

Applicable scenarios

It is suitable for scenarios such as drug discovery research, chemoinformatics analysis, and biological activity data mining. Researchers can quickly obtain the required chemical data through the API to accelerate the research process.

Main features

Full ChEMBL data access
Provides API access to all entities (molecules, targets, activity data, etc.) in the ChEMBL database
Asynchronous API calls
High-performance asynchronous API implemented based on the FastMCP framework, supporting concurrent request processing
Built-in error handling
Automated error handling and timeout mechanism to ensure service stability
Multiple transport methods
Supports two transport methods, HTTP and stdio, to meet different integration requirements
Chemical tools API
Provides practical chemical tools such as SMILES standardization and structure conversion
Advantages
Simplifies the access process of the ChEMBL database
High-performance asynchronous API design
Perfect error handling mechanism
Supports multiple transport protocols
Rich chemical data processing tools
Limitations
Requires an Internet connection to access the ChEMBL database
There may be performance limitations for large-scale data queries
Requires basic knowledge of API calls

How to use

Install the service
Clone the code repository and install the dependencies
Start the service
Choose a suitable startup method
Call the API
Call the API interface through an HTTP client or command-line tool

Usage cases

Query molecule activity data
Obtain all biological activity test results of a specific molecule in ChEMBL
SMILES standardization
Convert the SMILES string of a chemical molecule into a standard form
Obtain the SVG image of a molecule
Convert the molecular structure into an SVG format image

Frequently Asked Questions

Do I need a ChEMBL account to use it?
What should I do if there is a delay in the query results?
How can I obtain the latest chemical data?
Which chemical format conversions are supported?

Related resources

ChEMBL official website
The official website of the ChEMBL database
GitHub code repository
Project source code and latest updates
FastMCP framework documentation
Technical documentation of the underlying framework
Chemoinformatics tutorial
An introductory tutorial on chemoinformatics

Installation

Copy the following command to your Client for configuration
Note: Your key is sensitive information, do not share it with anyone.

Alternatives

V
Vestige
Vestige is an AI memory engine based on cognitive science. By implementing 29 neuroscience modules such as prediction error gating, FSRS - 6 spaced repetition, and memory dreaming, it provides long - term memory capabilities for AI. It includes a 3D visualization dashboard and 21 MCP tools, runs completely locally, and does not require the cloud.
Rust
4.6K
4.5 points
M
Moltbrain
MoltBrain is a long-term memory layer plugin designed for OpenClaw, MoltBook, and Claude Code, capable of automatically learning and recalling project context, providing intelligent search, observation recording, analysis statistics, and persistent storage functions.
TypeScript
5.2K
4.5 points
B
Bm.md
A feature-rich Markdown typesetting tool that supports multiple style themes and platform adaptation, providing real-time editing preview, image export, and API integration capabilities
TypeScript
4.9K
5 points
S
Security Detections MCP
Security Detections MCP is a server based on the Model Context Protocol that allows LLMs to query a unified security detection rule database covering Sigma, Splunk ESCU, Elastic, and KQL formats. The latest version 3.0 is upgraded to an autonomous detection engineering platform that can automatically extract TTPs from threat intelligence, analyze coverage gaps, generate SIEM-native format detection rules, run tests, and verify. The project includes over 71 tools, 11 pre-built workflow prompts, and a knowledge graph system, supporting multiple SIEM platforms.
TypeScript
6.2K
4 points
P
Paperbanana
Python
6.3K
5 points
F
Finlab Ai
FinLab AI is a quantitative financial analysis platform that helps users discover excess returns (alpha) in investment strategies through AI technology. It provides a rich dataset, backtesting framework, and strategy examples, supporting automated installation and integration into mainstream AI programming assistants.
6.8K
4 points
B
Better Icons
An MCP server and CLI tool that provides search and retrieval of over 200,000 icons, supports more than 150 icon libraries, and helps AI assistants and developers quickly obtain and use icons.
TypeScript
5.9K
4.5 points
A
Assistant Ui
assistant - ui is an open - source TypeScript/React library for quickly building production - grade AI chat interfaces, providing composable UI components, streaming responses, accessibility, etc., and supporting multiple AI backends and models.
TypeScript
7.6K
5 points
G
Gitlab MCP Server
Certified
The GitLab MCP server is a project based on the Model Context Protocol that provides a comprehensive toolset for interacting with GitLab accounts, including code review, merge request management, CI/CD configuration, and other functions.
TypeScript
24.6K
4.3 points
M
Markdownify MCP
Markdownify is a multi-functional file conversion service that supports converting multiple formats such as PDFs, images, audio, and web page content into Markdown format.
TypeScript
35.5K
5 points
N
Notion Api MCP
Certified
A Python-based MCP Server that provides advanced to-do list management and content organization functions through the Notion API, enabling seamless integration between AI models and Notion.
Python
21.4K
4.5 points
D
Duckduckgo MCP Server
Certified
The DuckDuckGo Search MCP Server provides web search and content scraping services for LLMs such as Claude.
Python
73.1K
4.3 points
F
Figma Context MCP
Framelink Figma MCP Server is a server that provides access to Figma design data for AI programming tools (such as Cursor). By simplifying the Figma API response, it helps AI more accurately achieve one - click conversion from design to code.
TypeScript
65.6K
4.5 points
U
Unity
Certified
UnityMCP is a Unity editor plugin that implements the Model Context Protocol (MCP), providing seamless integration between Unity and AI assistants, including real - time state monitoring, remote command execution, and log functions.
C#
32.3K
5 points
G
Gmail MCP Server
A Gmail automatic authentication MCP server designed for Claude Desktop, supporting Gmail management through natural language interaction, including complete functions such as sending emails, label management, and batch operations.
TypeScript
22.1K
4.5 points
M
Minimax MCP Server
The MiniMax Model Context Protocol (MCP) is an official server that supports interaction with powerful text-to-speech, video/image generation APIs, and is suitable for various client tools such as Claude Desktop and Cursor.
Python
49.1K
4.8 points
AIBase
Zhiqi Future, Your AI Solution Think Tank
English简体中文繁體中文にほんご
© 2026AIBase